ToolKits

DrQi’s tutorial talk on “Make Deep Learning Interpretable for Sequential Data Analysis in Biomedicine” (Including our work on DeepChrome - AttentiveChrome - GCNChrome - DeepMotif - DeepVHPPI - MotifTransformer)

less than 1 minute read

I gave a tutorial talk at UVA-VADC Seminar Series 2021 and at monthly NIH Data Science Showcase seminar.

Dr Qi’s Invited Talks on textattack

less than 1 minute read

On June 24th, 2021, I gave an invited talk at the Science Academy Machine Learning Summer School on “TextAttack: Generalizing Adversarial Examples to Natural...

CVPR - General Multi-label Image Classification with Transformers

1 minute read

Title: General Multi-label Image Classification with Transformers

EMNLP - Benchmarking Search Algorithms for Generating NLP Adversarial Examples

1 minute read

Title: Searching for a Search Method: Benchmarking Search Algorithms for Generating NLP Adversarial Examples

EMNLP - TextAttack- A Framework for Adversarial Attacks in Natural Language Processing

less than 1 minute read

Bioinformatics - FastSK- Fast Sequence Analysis with Gapped String Kernels

1 minute read

JointNets R package for Joint Network Estimation, Visualization, Simulation and Evaluation from Heterogeneous Samples

1 minute read

jointNets R package: a Suite of Fast and Scalable Tools for Learning Multiple Sparse Gaussian Graphical Models from Heterogeneous Data with Additional Knowle...

DrQi’s Feature Squeezing- Invited Talk at GMU

less than 1 minute read

On April 23 2019, I gave an invited talk at the ARO Invitational Workshop on Foundations of Autonomous Adaptive Cyber Systems

ECML - Graph Neural Networks for Multi-Label Classification

1 minute read

EvadeML-Zoo Benchmarking and Visualization AE Tool is released

2 minute read

We are releasing EvadeML-Zoo: A Benchmarking and Visualization Tool for Adversarial Examples (with 8 pretrained deep models+ 9 state-of-art attacks).

VizSec17 - Adversarial-Playground Paper Appear @ VizSec17

1 minute read

NeurIPS - AttentiveChrome-Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin

1 minute read

Tool AttentiveChrome: Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin

PSB - Deep Motif Dashboard- Visualizing and Understanding Genomic Sequences Using Deep Neural Networks

1 minute read

Tool Deep Motif Dashboard: Visualizing and Understanding Genomic Sequences Using Deep Neural Networks

Bioinformatics - DeepChrome- deep-learning for predicting gene expression from histone modifications

1 minute read

Tool DeepChrome: deep-learning for predicting gene expression from histone modifications