DeepSequence

DrQi’s tutorial talk on “Make Deep Learning Interpretable for Sequential Data Analysis in Biomedicine” (Including our work on DeepChrome - AttentiveChrome - GCNChrome - DeepMotif - DeepVHPPI - MotifTransformer)

less than 1 minute read

I gave a tutorial talk at UVA-VADC Seminar Series 2021 and at monthly NIH Data Science Showcase seminar.

ACM BCB - Transfer Learning for Predicting Virus-Host Protein Interactions for Novel Virus Sequences

2 minute read

Bioinformatics - Graph Convolutional Networks for Epigenetic State Prediction Using Both Sequence and 3D Genome Data

1 minute read

Bioinformatics - DeepDiff- Deep-learning for predicting Differential gene expression from histone modifications

1 minute read

Tool DeepDIff: DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications

Best Paper Award for Deep Motif Dashboard

less than 1 minute read

Jack’s DeepMotif paper (Deep Motif Dashboard: Visualizing and Understanding Genomic Sequences Using Deep Neural Networks ) have received the “best paper awar...

MLCB - Prototype Matching Networks for Large-Scale Multi-label Genomic Sequence Classification

1 minute read

NeurIPS - AttentiveChrome-Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin

1 minute read

Tool AttentiveChrome: Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin

ICLR - Memory Matching Networks for Genomic Sequence Classification

less than 1 minute read

PSB - Deep Motif Dashboard- Visualizing and Understanding Genomic Sequences Using Deep Neural Networks

1 minute read

Tool Deep Motif Dashboard: Visualizing and Understanding Genomic Sequences Using Deep Neural Networks

Bioinformatics - DeepChrome- deep-learning for predicting gene expression from histone modifications

1 minute read

Tool DeepChrome: deep-learning for predicting gene expression from histone modifications

AAAI - MUST-CNN- A Multilayer Shift-and-Stitch Deep Convolutional Architecture for Sequence-based Protein Structure Prediction

less than 1 minute read

Tool MUST-CNN: A Multilayer Shift-and-Stitch Deep Convolutional Architecture for Sequence-based Protein Structure Prediction

ECIR - Deep Learning for Character-based Information Extraction on Chinese and Protein Sequence

1 minute read

Title: Deep Learning for Character-based Information Extraction on Chinese and Protein Sequence

Plos- A unified multitask architecture for predicting local structural properties on proteins

1 minute read

Tool Multitask-ProteinTagging: A unified multitask architecture for predicting local protein properties

ECML - Systems and methods for semi-supervised relationship extraction

3 minute read

Bioinformatics - Semi-supervised multi-task learning Using BioText based Labels to Augument PPI Prediction

1 minute read