W-SIMULE

Tool W-SIMULE: A Constrained, Weighted-L1 Minimization Approach for Joint Discovery of Heterogeneous Neural Connectivity Graphs with Additional Prior knowledge

We are updating the R package: simule with one more function: W-SIMULE

install.packages("simule")
library(simule)
demo(wsimule)

Package Manual

GitHub

Paper: @Arxiv @ NIPS 2017 workshop for Advances in Modeling and Learning Interactions from Complex Data.

Presentation: @Slides

Poster: @PDF

Abstract

Determining functional brain connectivity is crucial to understanding the brain and neural differences underlying disorders such as autism. Recent studies have used Gaussian graphical models to learn brain connectivity via statistical dependencies across brain regions from neuroimaging. However, previous studies often fail to properly incorporate priors tailored to neuroscience, such as preferring shorter connections. To remedy this problem, the paper here introduces a novel, weighted-ℓ1, multi-task graphical model (W-SIMULE). This model elegantly incorporates a flexible prior, along with a parallelizable formulation. Additionally, W-SIMULE extends the often-used Gaussian assumption, leading to considerable performance increases. Here, applications to fMRI data show that W-SIMULE succeeds in determining functional connectivity in terms of (1) log-likelihood, (2) finding edges that differentiate groups, and (3) classifying different groups based on their connectivity, achieving 58.6\% accuracy on the ABIDE dataset. Having established W-SIMULE’s effectiveness, it links four key areas to autism, all of which are consistent with the literature. Due to its elegant domain adaptivity, W-SIMULE can be readily applied to various data types to effectively estimate connectivity.

Citations

@article{singh2017constrained,
  title={A Constrained, Weighted-L1 Minimization Approach for Joint Discovery of Heterogeneous Neural Connectivity Graphs},
  author={Singh, Chandan and Wang, Beilun and Qi, Yanjun},
  journal={arXiv preprint arXiv:1709.04090},
  year={2017}
}

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